[quote=Assallya]
The Pegasus Project, season 10.
[/quote]
I would like to draw you to the fact that they are aboard the Odyssey during that particular Episode. Try again.

[quote=WrongEndoftheRainbow]
Heh, and if I get accepted, the Citadel itself could act as a mobile base and also a factory.
[/quote]

Tor Selim does that too, though you could probably synth resources.

[quote=Assallya]
Plus, how is it that they never found any of the armouries? I figure there was a means of manufacturing, hidden armouries and a few other things that needed more than simply the ATA gene to access.[/quote]

[i]It wasn't a war ship.[/i] Drones were a later development and added on, they probably didn't manufacture drones on Atlantis. Otherwise when they got a grasp on the city it would have been one of the first things they searched for. That and a way to make ZPMs.