Also, because QT disappeared and couldn't expose Ruby's backstory, I'll just post what I have here to avoid confusion:
Ok, I believe I should begin from that which you know, or Adam's backstory, which you've presumably read as per instructions from me. In which case, I will elaborate a bit on the project Adam was apart of and the very critical role that his father (Dr Savage) played in this project.
Ok, so before Adam, the government had attempted to create super-soldiers for pretty obvious reasons. Strangely enough, they followed schematics from Nazi doctrine and although this worked up to a point, it could never produce soldiers that had a massive advantage over their average counterparts. So, when Dr Savage, a genealogist, came on-board, the government was incredibly disbelieving of his abilities but after demonstrating on animals through a method dubbed Forced-Rapid-Adaption, Dr Savage showed that he could not only increase human power but he could do so in a natural way.
The animal testing was a great breakthrough in gene-science but it was kept under the wraps as the military wanted more - they wanted human subjects. The first were soldiers, and the method just didn't work at all. Their bodies couldn't handle the change and they eventually had to be removed out of fear of them dying. Dr Savage theorized that because their bodies weren't changing so drastically, they weren't so willing to adapt in the way he wanted to. This led to the conclusion that he needed subjects who were still adapting and changing - teenagers, being the most likely candidate. The government didn't think that this was such a good idea but they eventually swayed when Dr Savage volunteered his own son to take part in the super-soldier programme. This new project was dubbed, Project Adam.
The rates of growth were exponential in the boy and with his knowledge of genes, Savage altered the boys very genetic makeup while simultaneously forcing his body into situations in which it had to adapt, making it change its own genetic makeup in a more accepting way. The results were outstanding, with Adam reaching the fitness level of top special forces by the age of fourteen. He kept adapting and eventually, he did by all rights become a super-soldier but Savage hypothesised that so much more could happen in a subject that already had the genetic makeup that was desirable for the project, so that Savage could add much more. His idea was to take Adam and to have him sire a child that by all definitions, would become the most advanced human in history. Of course, to better the child, there had to be a mother which would supply the child with even better genetics. Thus, Savage began Project Eve.
After seeing the results that the Doctor produced, the government were more than willing to help him but this would require some dirty work, of course. So, they abducted three teenage girls, about four years younger than Adam. After extensive media cover-ups and more dirty work, the girls were practically erased from society.
Savage obviously had lesser time to work with these females before he had to have them ready, so he attempted to accelerate his methods which overall, made them particularly more brutal. The girls had their genetic makeup changed, like Adam, but in a much quicker time. For this reason, their bodies could barely handle the change being placed on them and paired with the attempted rapid-adaption, two of the three cases ended in death. This was around the time metas were emerging and all three were picked to that standard - the two who died demonstrated powers in healing and mind-control but the third, who strangely lived, was the complete opposite. It seemed that the rapid-adaption, although incredibly painful to her, kept her alive. Just for clearance, they used methods like passing a current through her body which was nearly quadruple the amount required to kill a human. Obviously, some adjustments had to be made which involved surgeons placing biomechanical devices into the girl so that her body could handle the stress it was under. This included a reinforced spine, increased nerve-protection and super-capacitors which kept an electric charge on her heart, thereby keeping her alive. To prevent future problems, they also did a full wipe of her memory, which was an incredibly difficult but worthy process.
The success was ground-breaking, of course - the girl went from an E-Class meta to an A-class meta within a few years. By all accounts, Project Eve was a victory, despite killing two subjects and destroying the very emotional architecture of a young girl; an event, might I add, that was the worst decision of the entire project. Project Eve was merged into Project Adam, making an umbrella programme called Project Genesis. Both test subjects were exposed to one-another in preparation for them breeding, so to speak.
Even then, they couldn't see their biggest mistake; they were too blinded by their own success to notice the seed that they had sown.
With the test subject for Project Eve, they had increased her powers (technopathy) exponentially, allowing her to become the greatest weapon in an increasingly digital world. What they did not predict was that her intelligence began to increase with her powers - at first, it was barely noticeable but as she adapted more, her mind changed at an alarming rate. They would have noticed it eventually, but that was not to be. The subject developed at mind-numbing rates and eventually, after tapping into the system and creating her own language so as to completely obliterate its defences, the subject discovered the past they had taken away from her.
What resulted, was her disappearance, leaving over several people dead and Dr Savage paralyzed from the waist-down. Genesis was shut down but Adam was drawn to the front-lines as a hero. The subject became the biggest fuck-up in American history, considering she became one of the most infamous terrorists in existence - Ruby.