Protocol Bravo-Six was sufficient in evacuating the civilians and personnel from the responsive areas of the Khaganate fleet. Though the ordeal was slow, and many suffered from oxygen deprivation, they all made it to safety before direct contact was made with the entities responsible for the malfunctions.
The robot sent out by the KSS Science ship Aqua was, however, a little too late. The entity attached to the vessel had recently breached the hull. Whatever it was had now entered the ship, leaving in its wake an untidy hole a little over a meter in diameter. In a likewise manner, the various other entities attached to the other ships of the Khaganate fleet have also breached those hulls and entered those ships. These breaches will no doubt cause severe instabilities in the atmospheric and pressurized balance of these areas. The holes left in the hull by these intruders will perhaps be analysed. Analytical studies to the cause of these holes should not be so easy to determine. It would not be apparent as to whether they were made by intense heat, corrosive substances, or by some other undetermined means. No residual matter was left.
Given that the Khaganate are highly advanced and breaches of similar nature would duly be contained, the soldiers of the Omega Order - no doubt attired in suits designed to resist atmospheric hazards - would still have means to at the very least approach the outer limits of these contained areas. In doing so, the assigned units of the Omega Order might be surprised when they encounter a sole member of the Khaganate left behind in the contained area. Had not all civilians and personnel been evacuated? It would seem at first glance there is proof to the contrary:
The first of the Omega Units to arrive at their destination would come across a man. Whether it is by way of night vision goggles or torch light, this man will be discovered in the darkness of a corridor by the Omega Order Troops. The man appears to be one of their own, a civilian dressed in casual attire, yet does not seem to be perturbed by the lack of oxygen in the area. The man is simply standing there. He does not speak. He looks the soldiers over with an emotionless gaze and a small nod of recognition for his fellow man.
A similar event is experienced by each unit of the Omega Order when they arrive at their respective destinations. Each Omega unit is met by a single soldier, personnel or civilian who has seemingly been left behind in the evacuation. Each of these civilians, personnel or soldier are dressed and/or armed in accordance to the standards of their profession and status in Khaganate society. None of these individuals appear inhibited in any way by the lack of oxygen or atmospheric instabilities that might be current. None of them appear to be scared. None of them are behaving with initial hostility. None of them speak. Each of these individuals are calm and greet their approaching Omega unit in a likewise manner to the first.
All readings taken of these individuals would not reveal any signs of life, though small, negligible spikes in thermal radiation can be detected. Any scans at this preliminary stage would reveal only lifeless object in the physical form of a man or woman. Each of these forms will have the identical appearance of one of the people that had previously been evacuated from the area.
Donny does not appear to give a fuck. The Quantum Disruptors have a short and barely visible effect on the man. If anything at all, the energy from the weapons appear to fill him with added vitality. The rounds Donny releases from the Glock's intensify and still he finds no need to reload. Soon the pistols are firing several rounds a second while smoke caused by overheating billows from their metal.
While firing, Donny does not slow his pace. He walks with ease through midst of the Quatis officers and out the door to the corridor beyond. He pauses to holster one gun, the other gun melts away and becomes one with his body as he promptly closes the door behind him. In that moment, while his hand is still in contact with it, the door fuses to its frame as though it had instantly been welded shut.
Donny adjusts his tie like something of a business man and walks casually away from the scene. He tips his hat courteously to a lady passing by in the corridor.
“Ma’am.”
While these events are taking place, each entity attached to the ships of the Quatis fleet breach the hull in the same manner that they did with the Khaganate vessels. The undefined citizens and personnel the Quatis encounter will be the same in nature to those encountered by the Khaganate’s Omega Order units. The Quatis and Khaganate have been penetrated.
A few lightyears away, a great many objects of undefined shape and origin are on course to the Phantom Point Solar System. For anyone in the Phantom Point Solar System with the technology to scan surrounding space for signs of encroaching objects of inexplicable nature, would detect these subjects as a unified group of massive objects closing in on their general location.