Yeah...it felt more then a little limiting when I was playing Navi as his main purpose was to help break the Jedi out in the end. I liked that it wasn't easy but I didn't expect it to be an outright fortress on the inside plumbing. I thought more or less it was modified to contained Jedi for the trip which in my mind meant it still had flaws from the original design even if they were hard to get to. Meh, maybe I made it hard made it harder then necessary.
As for the character limit, I wouldn't toss it completely out the door. I suggest taking the middle ground instead and making it two main PCs with x amount slots open for NPCs. It might allow the players to create characters to interact and be killed off when they leave, vanish, etc. Too many pcs can clutter things fast and make it hard to keep track of the characters.
The time line, I agree it went too slow at times but there was a time or two I thought it skipped over too many days. The time line itself might've not been the problem but rather what happened during that timeline. There wasn't much other then torture, not that many Sith compared to Jedi, and none of the Jedi PCs really made progress towards escape or tried to intervene when one of their own was taken. Mine included which I aim to change for the reboot.
Not to mention with some scenes, like when Allanar was retrieved for Nyiss, it happened rather fast to me. I think Xid could've possibly tried to stop it if given a chance but instead he was already written out of the room before Xid could. I might make some altercations to Xid's personality, making him a little more inquisitive and curious, at least with machines. I still aim on keeping the incident with Ithor as it was fun to write and actually hope to explore that storyline one day farther.
Anyway, I have a few ideas if we're going with the reboot. Namely with Jayda when it comes to keeping her in the Plotline and interacting with others, though I'm not sure how well it will work as I'll need to talk to both GMs about it fully before I decide officially. On the subject of Jayda, Echo, I'll likely send you a pm about Hymo then in regards to the reboot. I would still like him to return for the reboot due to the slight Plotline I have in mind but after your mention about having only a limited number under your control, I might have Eli or myself take the format you've made of him and play it if you're no longer interested in playing him when the reboot happens. I might also recalculate the age math in my CS a bit, spacing Jayda's youth as a Padawan out and go into more detail too before then.